PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0063.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 928aa    MW: 101258 Da    PI: 6.7972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0063.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-11214313198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv +  d  ++g +vlpk+ +eeh   ++++ ++ +++ de g++W+++++++ ++++  y+l+     Fv++ +++ gD+v F++ 
  Sphfalx0016s0063.2.p 214 FEKVASVTDCRRTGHFVLPKRKVEEHfpPLVEPAGVWISFLDEFGKEWSFEFCFWHSKDSriYYLK-KFFPFVQSANIRGGDTVYFSRL 301
                           777888888899999*************99999*******************99777777768888.7889****************76 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  e++l+v+ ++
  Sphfalx0016s0063.2.p 302 E-PEGTLCVSYRK 313
                           5.88888888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-18208318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16212314IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-10213313No hitNo description
SMARTSM010195.9E-7214315IPR003340B3 DNA binding domain
PfamPF023624.8E-8214313IPR003340B3 DNA binding domain
PROSITE profilePS508639.277214315IPR003340B3 DNA binding domain
PROSITE profilePS510509.536501551IPR011124Zinc finger, CW-type
PfamPF074967.1E-6506547IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MGECCDQQDQ LLELVRLTKS GKKQGKILLQ LKSSSLGSSS NIANEEDAKG PVERQLQKSG  60
AELSGQSNDQ EHTLRGDSPT HESMSTPIDI YGSPREVMHE VESRTPHVDG KGPIADGDAA  120
NKSSSALATT ASTCQVPGGT SLLVGCVLGK RASRTEKQQI KGPPDWKLSD PKDKRLENAE  180
LPKNERSDNQ VLLRTVLPPV VTDNPSGSTM IYLFEKVASV TDCRRTGHFV LPKRKVEEHF  240
PPLVEPAGVW ISFLDEFGKE WSFEFCFWHS KDSRIYYLKK FFPFVQSANI RGGDTVYFSR  300
LEPEGTLCVS YRKQKPAATS KYVNGADICT NNLRMISSSN EVIQDLVNNG KSALDEVALR  360
GDLPQQPALM EINAADLENF TGRVFSKKKQ RVDSPSLAYQ SKVIDLLGVG KVLRGKKGSI  420
IRAALPQVLH CVNTISGSLG PRRKRLWMEL EEYIDWEGWQ NLLQAPPGAV PTIVSVEGHD  480
FEEYTDPPVL MKRAFSISNL LREGDQWVRC NNCGIWRRLP PGSLTSATCI CSDSARDPKR  540
SHCSASQGLC NDELDGLLGL FSDTEGRTDS DHEDCVEDEI CTPRVPNSAF DEECCDDKAV  600
LSSKASASVE MHSLEDETLD LSENSKFHTS EKVSPKDVPT SSLQLPGLKE DSTTYDPLSL  660
TVIKSTAYDT ISPAKVPGGS SQVCGLKLDS IPLEPSAVLS AKKSKLEYDI RARNSSGSVP  720
RSSLQPFGLK QVYSPSEAFA VLSNSNLNLD SNLPTDQKTP PQNASGSNLQ SVGLRLHSTT  780
YEVSAVLSTK EFDFNSKCSI SEKISPRSAP ETSLQLSLSK ESPPLALSSK SKLDSSCHVS  840
KKVLPMIVEG TSLQSSWFKQ DSFPREPSAV LAMKKSSYVR NGAGKGHQLC AGCDTSIGSA  900
AQVCKKCGRL TDYGIRKRAQ LTDQCQV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-45HSI2-like 1